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Publications 2010

Naveau M, Lazennec-Schurdevin C, Panvert M, Mechulam Y, Schmitt E.
tRNA binding properties of eukaryotic translation initiation factor 2 from Encephalitozoon cuniculi.
Biochemistry. 2010 , 49, 8680-8688 
 
Schmitt E, Naveau M, Mechulam Y
Eukaryotic and archaeal translation initiation factor 2 : a heterotrimeric tRNA carrier.
FEBS Lett. 2010, 548, 405-412 
 
Lazard M, Blanquet S, Fisicaro P, Labarraque G, Plateau P.
Uptake of selenite by Saccharomyces cerevisiae involves the high and low affinity orthophosphate transporters.
J Biol Chem. 2010, 285, 32029-32037.
 
Bougot-Robin K, Reverchon JL, Fromant M, Mugherli L, Plateau P, Benisty H.
2D label-free imaging of resonant grating biochips in ultraviolet.
Opt Express. 2010, 18, 11472-11482.
 
Bhalt TK, Yogarel M, Wydau S, Berwal R, Sharma A
Ligand-bound structures provide atomic snapshots for the catalytic mechanism of D-amino acid deacylase.
J.Biol.Chem. 2010, 285,5917-5930
 
Trivella A, Gaillard T, Stote RH, Hellwig P
Far infrared spectra of solid state aliphatic amino acids in different protonation states.
J.Chem.Phy, 2010, 132,115105
 
A. Aleksandrov, S. Polydorides, G. Archontis & T. Simonson (2010) Journal of Physical Chemistry B, 114, 10634-10648.
Predicting the acid/base behavior of proteins : a constant-pH Monte Carlo approach with generalized Born solvent.
 
M. Schmidt am Busch, A. Sedano & T. Simonson (2010) Plos One, 5(5), e10410.
Computational protein design : validation and possible relevance as a tool for homology searching and fold recognition.
 
A. Aleksandrov & T. Simonson (2010) Journal of Biological Chemistry, 285, 13807-13815
Molecular dynamics simulations show that conformational selection governs the binding preferences of imatinib for several tyrosine kinases.
 
D. Dalm, G. Palm, A. Aleksandrov, T. Simonson & W. Hinrichs (2010) Journal of Molecular Biology, 398, 83-96.
Non-antibiotic properties of tetracyclines : structural basis for inhibition of secretory Phospholipase A2.
 
A. Aleksandrov, D. Thompson & T. Simonson (2010) Journal of Molecular Recognition, 23, 117-127.
Alchemical free energy simulations for biological complexes : powerful but temperamental....
 
A. Aleksandrov & T. Simonson (2010) Journal of Computational Chemistry, 31, 1550-1560.
A molecular mechanics model for imatinib and imatinib:kinase binding.
 
A. Lopes, M. Schmidt am Busch & T. Simonson (2010) Journal of Computational Chemistry, 31, 1273-1286.
Computational design of protein:ligand binding : modifying the specificity of asparaginyl-tRNA synthetase.
 
Suarez M., Tortosa P., Garcia-Mira M.M., Rodriguez-Larrea D., Godoy-Ruiz R., Ibarra-Molero B., Sanchez-Ruiz J.M., Jaramillo A. Using multi-objective computational design to extend protein promiscuity Biophysical Chemistry, 2010, 147, 13-19.