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Publication 2006

  • L. Yatime, Y. Mechulam, S. Blanquet, E. Schmitt. Structural switch of the gamma subunit in an archaeal aIF2 alpha gamma heterodimer. Structure (2006) 14, 119-128. [Abstract]
  • N. Calimet, T. Simonson. Cys(x)His(y)-Zn(2+) interactions : possibilities and limitations of a simple pairwise force field. J. Mol. Graph. Model. (2006) 24, 404-411. [Abstract]
  • H. Oshikane, K. Sheppard, S. Fukai, Y. Nakamura, R. Ishitani, T. Numata, R.L. Sherrer, L. Feng, E. Schmitt, M. Panvert, S. Blanquet, Y. Mechulam, D. Söll, O. Nureki. Structural basis of RNA-dependent recruitment of glutamine to the genetic code. Science (2006) 312, 1950-1954. [Abstract]
  • D. Thompson, T. Simonson. (2006) Molecular dynamics simulations show that bound Mg(2+) contributes to amino acid and aminoacyl adenylate binding specificity in aspartyl-tRNA synthetase through long range electrostatic interactions. J. Biol. Chem. 281, 23792-23803. [Abstract][Full text]
  • M.L Ferri-Fioni, M. Fromant, A.P Bouin, C. Aubard, C. Lazennec, P. Plateau, S. Blanquet. Identification in archaea of a novel D-Tyr-tRNA(Tyr) deacylase. J. Biol. Chem. (2006) 281, 27575-27585. [Abstract][Full text]
  • D. Thompson, P. Plateau, T. Simonson. Free energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase. (2006) ChemBioChem 7, 337-344. [Abstract]
  • A. Aleksandrov, T. Simonson. The tetracycline:Mg(2+) complex : a molecular mechanics force field. (2006) J. Comput. Chem. 27, 1517-1533. [Abstract]
  • T. Simonson. Free energy calculations : approximate methods for biological macromolecules. In Free energy calculations : theory and applications in chemistry and biology. C. Chipot & A. Pohorille (eds), Springer Verlag, New York (2006).
  • C. Chipot, A.E. Mark, V.S. Pande, T. Simonson. Applications of free energy calculations to chemistry and biology. In Free energy calculations : theory and applications in chemistry and biology. C. Chipot & A. Pohorille (eds), Springer Verlag, New York (2006).